Tools for the biologist enabling optimized use of gene trap clones

  Homepage | Blast Search | GO Search | Advanced Search | About

Gene ENSMUSG00000029920 (Smarcad1)
Chromosomal location
Chr 6: 64992661 - 65066043 (+)
Description
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` Gene [Source:MGI Symbol;Acc:MGI:95453]
RefSeq_dna
NM_007958 
RefSeq_peptide
NP_031984.1 
UniGene
Mm.99113 Mm.412781 
MGI
MGI:95453 
Uniprot/SWISSPROT
Q04692 
Uniprot/SPTREMBL
Q3UGK6 Q3UYR6 
Human Ortholog
ENSG00000163104 (SMARCAD1)
Omim not available
UniTrap UNI6829
Vector Insertion
Chr 6: 64992956 - 64993199
Public Clones (sanger) YHA182 (baygenomics) D130F11 (ggtc) IST14480F5 (tigm) IST11549H3 (tigm)
IST11549G2 (tigm)
Private Clones OST456079 (lexicon) OST319479 (lexicon) OST288866 (lexicon) OST274821 (lexicon)
OST218380 (lexicon)
Severity of mutation (?) Insertion after 0% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI3781
Vector Insertion
Chr 6: 64993440 - 65002613
Public Clones XP0514 (sanger) (sanger) RHA230 (baygenomics) D172C11 (ggtc) E076B02 (ggtc)
E003B03 (ggtc) PST7350-NR (escells) PST14416-NR (escells) PST1712-3 (escells)
PST10172-NR (escells) PST3076-NR (escells) PST13545-NR (escells) PST1435-1 (escells)
PST15389-NR (escells) PST3196-NR (escells) PST12172-NR (escells) PSTVU01.K18 (vanderbilt)
IST14845H10 (tigm) IST12625E2 (tigm) IST11700E1 (tigm) IST12651D3 (tigm)
IST11604D10 (tigm) IST10402H8 (tigm) IST12306H8 (tigm) IST11268G11 (tigm)
IST14070H12 (tigm) IST13128A3 (tigm) IST14830F4 (tigm) IST10754A4 (tigm)
IST13025G6 (tigm)
Private Clones OST332744 (lexicon) OST65510 (lexicon)
Severity of mutation (?) Insertion after 6% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI10603
Vector Insertion
Chr 6: 65002792 - 65006396
Public Clones M117A05 (ggtc) H007H01 (ggtc) Q004F07 (ggtc) D004D05 (ggtc) H009H12 (ggtc)
A034E08 (ggtc) H007D02 (ggtc) (ggtc) H009F08 (ggtc) D004D06 (ggtc)
P017E07 (ggtc) IST10467H5 (tigm) IST10481G5 (tigm) IST10019F2 (tigm)
IST10260D5 (tigm)
Private Clones OST258219 (lexicon) OST247238 (lexicon) OST171184 (lexicon) OST127701 (lexicon)
OST76830 (lexicon)
Severity of mutation (?) Insertion after 12% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI4195
Vector Insertion
Chr 6: 65006563 - 65008059
Public Clones AM0151 (sanger) (sanger) W033F08 (ggtc) D015D06 (ggtc) G002A05 (ggtc)
PST22870-NR (escells) PST4506-NL (escells) PST20207-NL (escells) IST11171C7 (tigm)
Private Clones OST380250 (lexicon) OST144689 (lexicon) OST40343 (lexicon)
Severity of mutation (?) Insertion after 17% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI92
Vector Insertion
Chr 6: 65008127 - 65017040
Public Clones GC0008 (tigem) GC0504 (tigem) (sanger) AK0198 (sanger) AK0171 (sanger)
XD091 (baygenomics) BGC434 (baygenomics) BGC435 (baygenomics) W185C02 (ggtc)
E059C07 (ggtc) D068A02 (ggtc) A022A07 (ggtc) E138E01 (ggtc) E045C12 (ggtc)
E138A06 (ggtc) D117G07 (ggtc) M094E03 (ggtc) D145F09 (ggtc) M064B01 (ggtc)
E067F01 (ggtc) A022A06 (ggtc) E138H03 (ggtc) 3SE142F05 (ggtc) D118H04 (ggtc)
PST4605-NL (escells) PST7583-NR (escells) PST5680-NL (escells) PST492-1 (escells)
PST2549-NL (escells) PST25414-NR (escells) PST12536-NL (escells) PST7837-NR (escells)
PST4230-NR (escells) PST831-2 (escells) PST7399-NR (escells) PST4151-NL (escells)
PST7034-NL (escells) PST9121-NR (escells) PST24583-NR (escells) PST14199-NR (escells)
PST8896-NR (escells) PST9203-NR (escells) PST494-1 (escells) PST7256-NR (escells)
PST3533-NR (escells) PST8816-NL (escells) PST6482-NR (escells) PST17658-NR (escells)
PSTVU01.HE14R (vanderbilt) IST14873C1 (tigm) IST10978B5 (tigm) IST14827D11 (tigm)
IST11374H11 (tigm) IST11810E2 (tigm) IST11604C3 (tigm) IST11640H1 (tigm)
IST10262H12 (tigm) IST12130H6 (tigm) IST12533H5 (tigm) IST12448A12 (tigm)
IST11616A3 (tigm) IST12476D4 (tigm) IST10236D12 (tigm) IST11778E6 (tigm)
IST12593F5HMF1 (tigm) IST11320G11 (tigm) IST12322C1 (tigm) IST10537H7 (tigm)
IST12478C3 (tigm) IST12478D3 (tigm)
Private Clones OST454754 (lexicon) OST446790 (lexicon) OST436269 (lexicon) OST421189 (lexicon)
OST411025 (lexicon) OST407207 (lexicon) OST405762 (lexicon) OST330879 (lexicon)
OST315154 (lexicon) OST311691 (lexicon) OST226624 (lexicon) OST205578 (lexicon)
OST198669 (lexicon) OST195489 (lexicon) OST168754 (lexicon)
Severity of mutation (?) Insertion after 20% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI7714
Vector Insertion
Chr 6: 65017133 - 65021978
Public Clones RRS344 (baygenomics) P141G03 (ggtc) PST23474-NR (escells)
Private Clones OST406927 (lexicon)
Severity of mutation (?) Insertion after 23% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI38692
Vector Insertion
Chr 6: 65022081 - 65023187
Public Clones (sanger)
Private Clones not available
Severity of mutation (?) Insertion after 26% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI7846
Vector Insertion
Chr 6: 65025145 - 65033797
Public Clones (sanger) RRP079 (baygenomics) P116D04 (ggtc) IST11247D5 (tigm) IST10305C11 (tigm)
IST11680G5 (tigm)
Private Clones OST128689 (lexicon)
Severity of mutation (?) Insertion after 41% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI8159
Vector Insertion
Chr 6: 65033998 - 65040089
Public Clones RRH053 (baygenomics) IST14809C7 (tigm) IST11278G7 (tigm)
Private Clones not available
Severity of mutation (?) Insertion after 48% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI9616
Vector Insertion
Chr 6: 65040181 - 65042488
Public Clones RRB095 (baygenomics) P129H05 (ggtc) IST14773A9 (tigm) IST11605E4 (tigm)
Private Clones not available
Severity of mutation (?) Insertion after 51% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI9615
Vector Insertion
Chr 6: 65042589 - 65044124
Public Clones RRB094 (baygenomics) A045B08 (ggtc) IST12360F4 (tigm) IST11559A11 (tigm)
IST13061C10 (tigm)
Private Clones OST133896 (lexicon)
Severity of mutation (?) Insertion after 54% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI12289
Vector Insertion
Chr 6: 65044185 - 65044283
Public Clones A044E03 (ggtc)
Private Clones not available
Severity of mutation (?) Insertion after 56% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI1256
Vector Insertion
Chr 6: 65044360 - 65046024
Public Clones DD0769 (sanger) P131D03 (ggtc)
Private Clones OST242783 (lexicon) OST54933 (lexicon)
Severity of mutation (?) Insertion after 59% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI4003
Vector Insertion
Chr 6: 65049382 - 65057768
Public Clones AR0098 (sanger) RRR362 (baygenomics) RRK181 (baygenomics) IST11732F7 (tigm)
Private Clones not available
Severity of mutation (?) Insertion after 78% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI36465
Vector Insertion
Chr 6: 65061880 - 65064294
Public Clones IST11256C1 (tigm)
Private Clones not available
Severity of mutation (?) Insertion after 98% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

Show all transcripts and translations:

For any suggestions or comments, please send an email to unitrap@crg.es