Tools for the biologist enabling optimized use of gene trap clones

  Homepage | Blast Search | GO Search | Advanced Search | About

Gene ENSMUSG00000058076 (Sdhc)
Chromosomal location
Chr 1: 173059296 - 173080733 (-)
Description
succinate dehydrogenase complex, subunit C, integral membrane protein Gene [Source:MGI (curated);Acc:Sdhc-001]
RefSeq_dna
NM_025321 
RefSeq_peptide
NP_079597.1 
UniGene
Mm.198138 Mm.468933 
MGI
MGI:1913302 
Uniprot/SWISSPROT
Q9CZB0 
Uniprot/SPTREMBL
Q5XK33 
Human Ortholog
ENSG00000143252 (SDHC)
Omim 605373 - PARAGANGLIOMAS 3  606864 - PARAGANGLIOMA AND GASTRIC STROMAL SARCOMA  
UniTrap UNI10522
Vector Insertion
Chr 1: 173075944 - 173080689
Public Clones 5SE064G04 (ggtc) 3SE064G04 (ggtc) G059D02 (ggtc) IST14258C1 (tigm)
IST15054F4 (tigm)
Private Clones OST426569 (lexicon) OST414395 (lexicon) OST312234 (lexicon) OST309306 (lexicon)
OST204046 (lexicon) OST164082 (lexicon) OST163987 (lexicon) OST163986 (lexicon)
Severity of mutation (?) Insertion after 4% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI3611
Vector Insertion
Chr 1: 173068887 - 173073688
Public Clones BA0521 (sanger) G026B02 (ggtc) G040B03 (ggtc) G069E09 (ggtc) G028D01 (ggtc)
G073B04 (ggtc) CMHD-GT_327E10-3 (cmhd) CMHD-GT_304G1-3 (cmhd) CMHD-GT_402H12-3 (cmhd)
CMHD-GT_520F10-3 (cmhd) (egtc) IST12319E2 (tigm) IST10828B6 (tigm)
IST13231E12 (tigm) IST14326G8 (tigm) IST11309C2 (tigm) IST12354B5 (tigm)
IST10661H10 (tigm)
Private Clones OST451793 (lexicon) OST426476 (lexicon) OST417083 (lexicon) OST417044 (lexicon)
OST373920 (lexicon)
Severity of mutation (?) Insertion after 36% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI10557
Vector Insertion
Chr 1: 173066288 - 173068824
Public Clones G057C01 (ggtc) G064F11 (ggtc) G026E05 (ggtc) G062G03 (ggtc) P085B04 (ggtc)
3SE314C06 (ggtc) G084A07 (ggtc) G034H08 (ggtc) G056A05 (ggtc) G049A07 (ggtc)
P072H02 (ggtc) G041F11 (ggtc) G050H07 (ggtc) D117C06 (ggtc) (ggtc)
G081A05 (ggtc) G026D02 (ggtc) G052E05 (ggtc) G057B01 (ggtc) P077A03 (ggtc)
G034G05 (ggtc) G041F03 (ggtc) G040C04 (ggtc) CMHD-GT_301D2-3 (cmhd) CMHD-GT_404C8-3 (cmhd)
CMHD-GT_372B5-3 (cmhd) CMHD-GT_341B11-3 (cmhd) IST14872D3 (tigm) IST11636D12 (tigm)
IST11266B8 (tigm) IST14883C8 (tigm) IST10097H1 (tigm) IST10260E12 (tigm)
IST11680E3 (tigm) IST10366H2 (tigm) IST11854D6 (tigm) IST11782F6 (tigm)
IST10456G7 (tigm) IST11476C10 (tigm) IST13185B10 (tigm) IST10338G10 (tigm)
IST13308C1 (tigm) IST12306G10 (tigm) IST10976F12 (tigm) IST12295B1 (tigm)
Private Clones OST459573 (lexicon) OST440691 (lexicon) OST427420 (lexicon) OST375706 (lexicon)
OST367420 (lexicon) OST367232 (lexicon) OST330080 (lexicon) OST314503 (lexicon)
OST300228 (lexicon) OST280281 (lexicon) OST268059 (lexicon) OST219239 (lexicon)
OST197869 (lexicon) OST135489 (lexicon) OST132007 (lexicon) OST87355 (lexicon)
OST53861 (lexicon)
Severity of mutation (?) Insertion after 49% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI11257
Vector Insertion
Chr 1: 173060037 - 173066123
Public Clones P084E03 (ggtc) G062F06 (ggtc) G083B11 (ggtc) P086A09 (ggtc) G061E10 (ggtc)
P075C06 (ggtc) P077B12 (ggtc) G081A06 (ggtc) G041C07 (ggtc) CMHD-GT_358H1-3 (cmhd)
CMHD-GT_374C11-3 (cmhd) CMHD-GT_358F10-3 (cmhd) CMHD-GT_372H4-3 (cmhd) FHCRC-GT-S2-5E1 (fhcrc)
Private Clones not available
Severity of mutation (?) Insertion after 80% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI17309
Vector Insertion
Chr 1: 173060037 - 173066123
Public Clones CMHD-GT_542C2-3S (cmhd) CMHD-GT_542C2-5S (cmhd) CMHD-GT_536G11-5S (cmhd)
Private Clones OST445417 (lexicon) OST441725 (lexicon) OST436873 (lexicon) OST426432 (lexicon)
OST413425 (lexicon) OST383475 (lexicon) OST364050 (lexicon) OST357117 (lexicon)
OST350872 (lexicon) OST341113 (lexicon) OST330112 (lexicon) OST323881 (lexicon)
OST323878 (lexicon) OST310260 (lexicon) OST305325 (lexicon) OST277182 (lexicon)
OST245793 (lexicon) OST245732 (lexicon) OST112526 (lexicon) OST109484 (lexicon)
OST74081 (lexicon) OST65697 (lexicon) OST47140 (lexicon) OST34110 (lexicon)
OST28656 (lexicon) OST27976 (lexicon) OST18889 (lexicon) OST15658 (lexicon)
OST6985 (lexicon) OST5834 (lexicon) OST1154 (lexicon)
Severity of mutation (?) Insertion after 80% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

UniTrap UNI12872
Vector Insertion
Chr 1: 173059295 - 173060037
Public Clones CMHD-GT_146D3-3 (cmhd) CMHD-GT_458B9-3 (cmhd) CMHD-GT_406B3-3 (cmhd) CMHD-GT_329C10-3 (cmhd)
CMHD-GT_93B10-3 (cmhd) CMHD-GT_430A5-3 (cmhd) CMHD-GT_385B11-3 (cmhd) CMHD-GT_329C7-3 (cmhd)
CMHD-GT_542C2-3 (cmhd) CMHD-GT_441C10-3 (cmhd) CMHD-GT_360G8-3 (cmhd) CMHD-GT_361D6-3 (cmhd)
IST13077G2 (tigm)
Private Clones not available
Severity of mutation (?) Insertion after 80% of polypeptide chain
Proposed experimental design for vector insertion validation (?)

Show all transcripts and translations:

For any suggestions or comments, please send an email to unitrap@crg.es