Tools for the biologist enabling optimized use of gene trap clones

  Homepage | Blast Search | GO Search | Advanced Search | About

UniTrap UNI11558
Trapped Gene
Mrpl52 (ENSMUSG00000010406)
Vector Insertion
Chr 14: 55046076 - 55047420
Public Clones (sanger) (ggtc) P068E03 (ggtc) D070E07 (ggtc)
Private Clones not available
Severity of mutation (?) Insertion after 44% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000124127 (Chr14:55046008..55046075 +)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
No primer for this exon TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000124127 (Chr14:55046008..55046075 +)
Downstram Exon
ENSMUSE00000124126 (Chr14:55047421..55047485 +)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
No primer for this exon No primer for this exon

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000124124 Chr14:55045747..55045797 No primer for this exon
upstream ENSMUSE00000124125 Chr14:55045871..55045928 No primer for this exon
upstream ENSMUSE00000124127 Chr14:55046008..55046075 No primer for this exon

*** Putative Vector Insertion (Chr 14: 55046076 - 55047420) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000124126 Chr14:55047421..55047485 No primer for this exon
downstream ENSMUSE00000124123 Chr14:55048419..55048590 No primer for this exon

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 ATAATCGCCTTGCAGCACAT Chr14:55046126..55046146 60.64 45 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 AGCTCCCTGACTGGTCCTTC Chr14:55046053..55046073 60.79 60 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000010406