Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI12225
Trapped Gene
D16H22S680E (ENSMUSG00000013539)
Vector Insertion
Chr 16: 18324449 - 18324544
Public Clones A049A05 (ggtc)
Private Clones not available
Severity of mutation (?) Insertion after 0% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000129843 (Chr16:18324450..18324543 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
No primer for this exon TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000129843 (Chr16:18324450..18324543 -)
Downstram Exon
ENSMUSE00000703631 (Chr16:18324450..18324546 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
No primer for this exon No primer for this exon

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000703647 Chr16:18343988..18344007 No primer for this exon
upstream ENSMUSE00000129843 Chr16:18324450..18324543 No primer for this exon
upstream ENSMUSE00000703631 Chr16:18324450..18324546 No primer for this exon

*** Putative Vector Insertion (Chr 16: 18324449 - 18324544) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000129845 Chr16:18316739..18316827 No primer for this exon
downstream ENSMUSE00000129848 Chr16:18312732..18312851 No primer for this exon
downstream ENSMUSE00000129846 Chr16:18310962..18311076 No primer for this exon
downstream ENSMUSE00000129849 Chr16:18308063..18308133 No primer for this exon
downstream ENSMUSE00000129844 Chr16:18303776..18303929 No primer for this exon
downstream ENSMUSE00000129850 Chr16:18302779..18302883 No primer for this exon
downstream ENSMUSE00000364418 Chr16:18300920..18301645 No primer for this exon

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 TCCTTTTCCCACAGACCTTG Chr16:18324536..18324556 60.08 50 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 TCCTTTTCCCACAGACCTTG Chr16:18324536..18324556 60.08 50 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000013539