Tools for the biologist enabling optimized use of gene trap clones
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UniTrap UNI18416
Trapped Gene 
Fnbp1 (ENSMUSG00000075415)
Vector Insertion 
Chr 2: 30881726 - 30884404
Public Clones not available
Private Clones OST423866 (lexicon)
Severity of mutation (?) Insertion after 100% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000696146 (Chr2:30881727..30884403 -)		 Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
TTCATCGGATCCTGTTCTCC Chr2:30883479..30883498 60.01 50 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000696146 (Chr2:30881727..30884403 -)		 Downstram Exon
ENSMUSE00000696149 (Chr2:30881726..30884403 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
TTCATCGGATCCTGTTCTCC Chr2:30883479..30883498 60.01 50 GGAGAACAGGATCCGATGAA Chr2:30883457..30883476 60.01 50

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000479781 Chr2:30997299..30997526 CTTTCCGCATTCACAAGGTT Chr2:30997383..30997402 60.11 45
upstream ENSMUSE00000662797 Chr2:30997299..30997528 CTTTCCGCATTCACAAGGTT Chr2:30997383..30997402 60.11 45
upstream ENSMUSE00000696139 Chr2:30997299..30997322 No primer for this exon
upstream ENSMUSE00000696122 Chr2:30971745..30971807 ATGGAAGATGGCCTGATGAA Chr2:30971788..30971807 60.43 45
upstream ENSMUSE00000696128 Chr2:30965016..30965028 No primer for this exon
upstream ENSMUSE00000696143 Chr2:30965016..30965029 No primer for this exon
upstream ENSMUSE00000696142 Chr2:30961422..30961429 No primer for this exon
upstream ENSMUSE00000281967 Chr2:30960762..30960877 CAAGGAGAGGACGGAGATTG Chr2:30960787..30960806 59.8 55
upstream ENSMUSE00000163540 Chr2:30952614..30952670 AACTCGAAGGAAGAGGAGGA Chr2:30952620..30952639 58.05 50
upstream ENSMUSE00000163542 Chr2:30951547..30951694 CAGCACGAGGTCATCTCTGA Chr2:30951617..30951636 60.14 55
upstream ENSMUSE00000163538 Chr2:30939543..30939605 GGCTCAGCAGCACATAGAAA Chr2:30939566..30939585 59.18 50
upstream ENSMUSE00000163541 Chr2:30938494..30938598 GTTTGAGCGGGACTGTAAGG Chr2:30938568..30938587 59.73 55
upstream ENSMUSE00000717061 Chr2:30914409..30914537 TACCCACATCCCCAACATCT Chr2:30914414..30914433 60.05 50
upstream ENSMUSE00000722142 Chr2:30914409..30914537 TACCCACATCCCCAACATCT Chr2:30914414..30914433 60.05 50
upstream ENSMUSE00000696123 Chr2:30914128..30914133 No primer for this exon
upstream ENSMUSE00000281923 Chr2:30910948..30911094 TGAAGACGTACGCAGAGGTG Chr2:30911026..30911045 60.05 55
upstream ENSMUSE00000696119 Chr2:30910948..30911094 TGAAGACGTACGCAGAGGTG Chr2:30911026..30911045 60.05 55
upstream ENSMUSE00000568127 Chr2:30909544..30909738 CCAATGAAACGCACAGTGTC Chr2:30909641..30909660 60.16 50
upstream ENSMUSE00000696126 Chr2:30909511..30909738 CCAATGAAACGCACAGTGTC Chr2:30909641..30909660 60.16 50
upstream ENSMUSE00000662796 Chr2:30908755..30909738 CTCCCAGCTGGTCGTAGAAG Chr2:30909717..30909736 60.01 60
upstream ENSMUSE00000506828 Chr2:30908505..30908600 CAAACCCAAAATCCACTGCT Chr2:30908525..30908544 59.97 45
upstream ENSMUSE00000568126 Chr2:30908505..30908687 CAAACCCAAAATCCACTGCT Chr2:30908525..30908544 59.97 45
upstream ENSMUSE00000696157 Chr2:30908505..30908657 CAAACCCAAAATCCACTGCT Chr2:30908525..30908544 59.97 45
upstream ENSMUSE00000696148 Chr2:30900402..30900416 No primer for this exon
upstream ENSMUSE00000604325 Chr2:30895925..30896034 CAGAAGGAGACGGACCAGAG Chr2:30895925..30895944 59.98 60
upstream ENSMUSE00000604324 Chr2:30892676..30892808 AGAAGCTCACCGAAGTCACC Chr2:30892718..30892737 59.46 55
upstream ENSMUSE00000604323 Chr2:30892062..30892183 CAGACACACCAGACGGTCAC Chr2:30892086..30892105 60.21 60
upstream ENSMUSE00000604322 Chr2:30891638..30891774 CGGATTTCGACGATGAATTT Chr2:30891696..30891715 59.9 40
upstream ENSMUSE00000568116 Chr2:30888550..30888708 TTACGTCCCCACTTCCTACG Chr2:30888580..30888599 59.99 55
upstream ENSMUSE00000696131 Chr2:30888530..30888708 TTACGTCCCCACTTCCTACG Chr2:30888580..30888599 59.99 55
upstream ENSMUSE00000335812 Chr2:30888523..30888708 TTACGTCCCCACTTCCTACG Chr2:30888580..30888599 59.99 55
upstream ENSMUSE00000696134 Chr2:30888519..30888708 TTACGTCCCCACTTCCTACG Chr2:30888580..30888599 59.99 55
upstream ENSMUSE00000696146 Chr2:30881727..30884403 TTCATCGGATCCTGTTCTCC Chr2:30883479..30883498 60.01 50
upstream ENSMUSE00000696138 Chr2:30881726..30888708 AGGCACCATTTCCGTAGTTG Chr2:30888679..30888698 59.99 50
upstream ENSMUSE00000696149 Chr2:30881726..30884403 TTCATCGGATCCTGTTCTCC Chr2:30883479..30883498 60.01 50

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 AGGTTCCTAAAGGCGTGGTG Chr2:30884384..30884404 61.41 55 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 AGGTTCCTAAAGGCGTGGTG Chr2:30884384..30884404 61.41 55 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000075415