Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI18950
Trapped Gene
Ap3s2 (ENSMUSG00000063801)
Vector Insertion
Chr 7: 87025499 - 87027351
Public Clones not available
Private Clones OST409046 (lexicon)
Severity of mutation (?) Insertion after 78% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000317677 (Chr7:87027352..87027459 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
AGCTCAAAACCGACTGGAGA Chr7:87027360..87027379 59.99 50 TGGCGAAAGGGGGATGTG Gene trap vector
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000317677 (Chr7:87027352..87027459 -)
Downstram Exon
ENSMUSE00000317668 (Chr7:87020218..87025498 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
AGCTCAAAACCGACTGGAGA Chr7:87027360..87027379 59.99 50 AGGTGAAGAACACCCCACAG Chr7:87021443..87021462 60 55

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000317706 Chr7:87065395..87065487 ATGATTCAGGCGATTCTGGT Chr7:87065444..87065463 59.51 45
upstream ENSMUSE00000200298 Chr7:87060902..87060993 CCTCAAGCGAGATGACAACA Chr7:87060927..87060946 59.98 50
upstream ENSMUSE00000200301 Chr7:87060033..87060144 TTGGGATCTTGGACCTCATC Chr7:87060036..87060055 59.86 50
upstream ENSMUSE00000317686 Chr7:87054721..87054792 TGAGTTGGACTTGATCTTCCA Chr7:87054731..87054751 58.27 42.86
upstream ENSMUSE00000317677 Chr7:87027352..87027459 AGCTCAAAACCGACTGGAGA Chr7:87027360..87027379 59.99 50

*** Putative Vector Insertion (Chr 7: 87025499 - 87027351) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000317668 Chr7:87020218..87025498 AGGTGAAGAACACCCCACAG Chr7:87021443..87021462 60 55

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
  No PCR available

Come back to gene ENSMUSG00000063801