Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI21065
Trapped Gene
Dnaja3 (ENSMUSG00000004069)
Vector Insertion
Chr 16: 4705961 - 4706567
Public Clones not available
Private Clones OST342645 (lexicon)
Severity of mutation (?) Insertion after 100% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000127799 (Chr16:4705844..4705960 +)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
No primer for this exon TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000127799 (Chr16:4705844..4705960 +)
Downstram Exon
ENSMUSE00000564297 (Chr16:4706568..4707691 +)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
No primer for this exon No primer for this exon

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000293876 Chr16:4684123..4684344 No primer for this exon
upstream ENSMUSE00000707554 Chr16:4684134..4684344 No primer for this exon
upstream ENSMUSE00000293866 Chr16:4687237..4687370 No primer for this exon
upstream ENSMUSE00000127792 Chr16:4689981..4690064 No primer for this exon
upstream ENSMUSE00000293851 Chr16:4693212..4693412 No primer for this exon
upstream ENSMUSE00000293783 Chr16:4694364..4694516 No primer for this exon
upstream ENSMUSE00000127796 Chr16:4696389..4696536 No primer for this exon
upstream ENSMUSE00000127795 Chr16:4697251..4697315 No primer for this exon
upstream ENSMUSE00000127793 Chr16:4699749..4699877 No primer for this exon
upstream ENSMUSE00000127790 Chr16:4701169..4701284 No primer for this exon
upstream ENSMUSE00000127794 Chr16:4702211..4702308 No primer for this exon
upstream ENSMUSE00000127799 Chr16:4705844..4705960 No primer for this exon

*** Putative Vector Insertion (Chr 16: 4705961 - 4706567) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000564297 Chr16:4706568..4707691 No primer for this exon
downstream ENSMUSE00000704380 Chr16:4706568..4707691 No primer for this exon

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 TACCCCTGCTGAGGTAGGAA Chr16:4705949..4705969 59.69 55 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 TACCCCTGCTGAGGTAGGAA Chr16:4705949..4705969 59.69 55 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000004069