Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI23137
Trapped Gene
Pou5f1 (ENSMUSG00000024406)
Vector Insertion
Chr 17: 35647085 - 35647232
Public Clones CMHD-GT_490G1-3 (cmhd) IST14000D9 (tigm)
Private Clones OST275318 (lexicon)
Severity of mutation (?) Insertion after 75% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000142021 (Chr17:35646926..35647084 +)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
ATCACTCACATCGCCAATCA Chr17:35647046..35647065 60.08 45 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000142021 (Chr17:35646926..35647084 +)
Downstram Exon
ENSMUSE00000394011 (Chr17:35647233..35647714 +)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
ATCACTCACATCGCCAATCA Chr17:35647046..35647065 60.08 45 TGGGAAAGGTGTCCCTGTAG Chr17:35647337..35647356 59.96 55

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000142023 Chr17:35643007..35643428 AGCACGAGTGGAAAGCAACT Chr17:35643329..35643348 60.06 50
upstream ENSMUSE00000142019 Chr17:35646048..35646168 GCAGAAGAGGATCACCTTGG Chr17:35646104..35646123 59.8 55
upstream ENSMUSE00000142025 Chr17:35646353..35646483 AGCCGACAACAATGAGAACC Chr17:35646456..35646475 60.12 50
upstream ENSMUSE00000142021 Chr17:35646926..35647084 ATCACTCACATCGCCAATCA Chr17:35647046..35647065 60.08 45

*** Putative Vector Insertion (Chr 17: 35647085 - 35647232) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000394011 Chr17:35647233..35647714 TGGGAAAGGTGTCCCTGTAG Chr17:35647337..35647356 59.96 55

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 CAGCTTGGGCTAGAGAAGGA Chr17:35647065..35647085 59.71 55 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 CAGCTTGGGCTAGAGAAGGA Chr17:35647065..35647085 59.71 55 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000024406