Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI25115
Trapped Gene
Etv5 (ENSMUSG00000013089)
Vector Insertion
Chr 16: 22436634 - 22439589
Public Clones D164C05 (ggtc) D164C05 (ggtc)
Private Clones OST194772 (lexicon) OST181698 (lexicon) OST108269 (lexicon)
Severity of mutation (?) Insertion after 0% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000560923 (Chr16:22439590..22439691 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
No primer for this exon TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000560923 (Chr16:22439590..22439691 -)
Downstram Exon
ENSMUSE00000407999 (Chr16:22436511..22436633 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
No primer for this exon No primer for this exon

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000560923 Chr16:22439590..22439691 No primer for this exon

*** Putative Vector Insertion (Chr 16: 22436634 - 22439589) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000407999 Chr16:22436511..22436633 No primer for this exon
downstream ENSMUSE00000378517 Chr16:22436274..22436361 No primer for this exon
downstream ENSMUSE00000310554 Chr16:22436093..22436140 No primer for this exon
downstream ENSMUSE00000478899 Chr16:22435950..22436000 No primer for this exon
downstream ENSMUSE00000644755 Chr16:22421892..22421945 No primer for this exon
downstream ENSMUSE00000414095 Chr16:22412918..22413047 No primer for this exon
downstream ENSMUSE00000497015 Chr16:22411706..22411993 No primer for this exon
downstream ENSMUSE00000362934 Chr16:22401745..22402004 No primer for this exon
downstream ENSMUSE00000310460 Chr16:22399393..22399452 No primer for this exon
downstream ENSMUSE00000310522 Chr16:22393060..22393128 No primer for this exon
downstream ENSMUSE00000131370 Chr16:22392728..22392897 No primer for this exon
downstream ENSMUSE00000560895 Chr16:22386830..22386931 No primer for this exon
downstream ENSMUSE00000702629 Chr16:22381385..22383764 No primer for this exon

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 AGTAATCGCCTTGCAGCACAT Chr16:22436613..22436634 62.07 47.62 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 TTACAGCGTGACTGGGAAAA Chr16:22436618..22436638 59.32 45 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector
PCR 3 CATCCCCGATCGCTGTAATC Chr16:22439636..22439656 62.66 55 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 4 AAACTTAAGCCACCCCACCT Chr16:22439668..22439688 59.86 50 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000013089