Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI27715
Trapped Gene
Lace1 (ENSMUSG00000038302)
Vector Insertion
Chr 10: 42145115 - 42146291
Public Clones not available
Private Clones OST51970 (lexicon)
Severity of mutation (?) Insertion after 36% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000409796 (Chr10:42146292..42146393 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
AGAGAAAGAAGCGGGTCCAT Chr10:42146323..42146342 60.21 50 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000409796 (Chr10:42146292..42146393 -)
Downstram Exon
ENSMUSE00000296366 (Chr10:42144984..42145114 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
AGAGAAAGAAGCGGGTCCAT Chr10:42146323..42146342 60.21 50 CTATGGGAGCTATCGGGTCA Chr10:42145012..42145031 60.05 55

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000370816 Chr10:42198069..42198221 CTGACTGGGAGAGGTGTTGG Chr10:42198134..42198153 60.7 60
upstream ENSMUSE00000407277 Chr10:42174113..42174336 GCCTCTGGACCACTACGACT Chr10:42174235..42174254 59.33 60
upstream ENSMUSE00000296383 Chr10:42158160..42158211 AAACCTCCAAAGGGCCTCTA Chr10:42158177..42158196 60.07 50
upstream ENSMUSE00000409796 Chr10:42146292..42146393 AGAGAAAGAAGCGGGTCCAT Chr10:42146323..42146342 60.21 50

*** Putative Vector Insertion (Chr 10: 42145115 - 42146291) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000296366 Chr10:42144984..42145114 CTATGGGAGCTATCGGGTCA Chr10:42145012..42145031 60.05 55
downstream ENSMUSE00000296357 Chr10:42135355..42135454 GACCCCGTTTTTGAACAGAT Chr10:42135367..42135386 58.89 45
downstream ENSMUSE00000296347 Chr10:42120147..42120205 TGGCACAAAGTTAGCCCTCT Chr10:42120143..42120162 59.88 50
downstream ENSMUSE00000296337 Chr10:42079971..42080053 CAGCTGGAGCGTATCACAAT Chr10:42080008..42080027 58.9 50
downstream ENSMUSE00000296327 Chr10:42059988..42060058 CCTCCACATCAGCCTCACTT Chr10:42060014..42060033 60.26 55
downstream ENSMUSE00000296320 Chr10:42059631..42059731 CTTTATTCAGCCGCAGCTCT Chr10:42059656..42059675 59.75 50
downstream ENSMUSE00000296311 Chr10:42038398..42038538 AAAACTGCGGAATGTTTCGT Chr10:42038441..42038460 59.62 40
downstream ENSMUSE00000296302 Chr10:42036156..42036269 TCCGACTCACTGTCCTGATG Chr10:42036174..42036193 59.82 55
downstream ENSMUSE00000413000 Chr10:42032394..42033422 TCCTGCATACTCTGCCTGTG Chr10:42032976..42032995 60.01 55

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 GTCCATTTTCACGGCTTCAT Chr10:42146307..42146327 59.94 45 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 GTCCATTTTCACGGCTTCAT Chr10:42146307..42146327 59.94 45 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000038302