Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI36359
Trapped Gene
Tmem108 (ENSMUSG00000042757)
Vector Insertion
Chr 9: 103512040 - 103655298
Public Clones IST10844D6 (tigm)
Private Clones not available
Severity of mutation (?) Insertion after 0% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000634724 (Chr9:103655185..103655297 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
ATGGGTTGCGAGGATGTAAG Chr9:103655219..103655238 59.96 50 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000634724 (Chr9:103655185..103655297 -)
Downstram Exon
ENSMUSE00000634723 (Chr9:103512041..103512126 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
ATGGGTTGCGAGGATGTAAG Chr9:103655219..103655238 59.96 50 GGCAATAGAGGGCCTGTAAA Chr9:103512028..103512047 59.18 50

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000634725 Chr9:103664085..103664132 No primer for this exon
upstream ENSMUSE00000634724 Chr9:103655185..103655297 ATGGGTTGCGAGGATGTAAG Chr9:103655219..103655238 59.96 50
upstream ENSMUSE00000634723 Chr9:103512041..103512126 GGCCCTCTATTGCCAACTATT Chr9:103512043..103512063 59.48 47.62

*** Putative Vector Insertion (Chr 9: 103512040 - 103655298) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000503630 Chr9:103401132..103402538 GCTGAGACAGTGGCATCAAA Chr9:103401451..103401470 59.99 50
downstream ENSMUSE00000318056 Chr9:103391519..103391673 CCATTGTGATGGCATTGTTC Chr9:103391559..103391578 59.78 45
downstream ENSMUSE00000530513 Chr9:103386108..103387113 GGAACCTCTACATGCCCAGA Chr9:103386694..103386713 60.07 55

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 GCATCCGCTGTTTGACTCTAT Chr9:103541269..103541290 59.35 47.62 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 TATCCGTGACTGGGAAAACC Chr9:103541231..103541251 59.79 50 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000042757