Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI37030
Trapped Gene
C230052I12Rik (ENSMUSG00000030493)
Vector Insertion
Chr 7: 36178111 - 36179993
Public Clones CMHD-GT_241C8-3 (cmhd)
Private Clones not available
Severity of mutation (?) Insertion after 60% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000199763 (Chr7:36179994..36180146 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
TTCCCAGCAGTCCAGAAGTT Chr7:36180070..36180089 59.84 50 TGGCGAAAGGGGGATGTG Gene trap vector
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000199763 (Chr7:36179994..36180146 -)
Downstram Exon
ENSMUSE00000402672 (Chr7:36177324..36178110 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
TTCCCAGCAGTCCAGAAGTT Chr7:36180070..36180089 59.84 50 CACTGGTTAACGGGGACACT Chr7:36177474..36177493 59.88 55

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000405158 Chr7:36181232..36181827 GGTCCCGACTTCGTGTAGAA Chr7:36181402..36181421 60.11 55
upstream ENSMUSE00000199764 Chr7:36180256..36180395 CCTGGCATCAGCAGATTTTT Chr7:36180348..36180367 60.21 45
upstream ENSMUSE00000199763 Chr7:36179994..36180146 TTCCCAGCAGTCCAGAAGTT Chr7:36180070..36180089 59.84 50

*** Putative Vector Insertion (Chr 7: 36178111 - 36179993) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000402672 Chr7:36177324..36178110 CACTGGTTAACGGGGACACT Chr7:36177474..36177493 59.88 55

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 GGAAGCATCCTGCCTCATTA Chr7:36180000..36180020 60.18 50 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 GGAAGCATCCTGCCTCATTA Chr7:36180000..36180020 60.18 50 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000030493