Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI38542
Trapped Gene
Fbxl17 (ENSMUSG00000023965)
Vector Insertion
Chr 17: 63429769 - 63574451
Public Clones (sanger)
Private Clones not available
Severity of mutation (?) Insertion after 76% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000307985 (Chr17:63574374..63574450 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
AGGTCATTGCAAAGGAAGGA Chr17:63574423..63574442 59.67 45 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000307985 (Chr17:63574374..63574450 -)
Downstram Exon
ENSMUSE00000358045 (Chr17:63429770..63429912 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
AGGTCATTGCAAAGGAAGGA Chr17:63574423..63574442 59.67 45 ATCCGACGTCCACAGTCTCT Chr17:63429837..63429856 59.71 55

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000385763 Chr17:63848374..63848649 CCGAGATCCCAGACATCAAC Chr17:63848401..63848420 60.47 55
upstream ENSMUSE00000693382 Chr17:63842038..63842102 GACCTACAGCCCTTGGTCAT Chr17:63842044..63842063 59.02 55
upstream ENSMUSE00000308088 Chr17:63840114..63840236 TTTGCAAGTACTGGCGTGAC Chr17:63840168..63840187 59.91 50
upstream ENSMUSE00000136693 Chr17:63837061..63837318 ACGTAGGCAACCAGGACAAG Chr17:63837085..63837104 60.17 55
upstream ENSMUSE00000136695 Chr17:63820757..63820888 AGACATCCATTTTGGCCAGT Chr17:63820843..63820862 59.41 45
upstream ENSMUSE00000693381 Chr17:63800931..63801014 TGGTTTTGTGCTGCTGGATA Chr17:63800984..63801003 60.26 45
upstream ENSMUSE00000136696 Chr17:63734294..63734401 GTTGGCTTCATGGGTTGTTC Chr17:63734328..63734347 60.36 50
upstream ENSMUSE00000136692 Chr17:63706097..63706227 CCAGCTTAGACCTCCGTCAC Chr17:63706195..63706214 59.87 60
upstream ENSMUSE00000307985 Chr17:63574374..63574450 AGGTCATTGCAAAGGAAGGA Chr17:63574423..63574442 59.67 45
upstream ENSMUSE00000358045 Chr17:63429770..63429912 ATAGCCATTGGGCGATACAG Chr17:63429888..63429907 59.94 50

*** Putative Vector Insertion (Chr 17: 63429769 - 63574451) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000439569 Chr17:63407131..63409760 ATATTGCCAGCTGGTTTTGG Chr17:63407755..63407774 59.96 45

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 ATTTCCAATTCGGGCTTTTT Chr17:63508479..63508499 59.79 35 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 ATTTCCAATTCGGGCTTTTT Chr17:63508479..63508499 59.79 35 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000023965