Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI429
Trapped Gene
Herc4 (ENSMUSG00000020064)
Vector Insertion
Chr 10: 62708874 - 62726773
Public Clones DD0684 (sanger) (sanger) (cmhd) IST10559B2 (tigm)
Private Clones OST362130 (lexicon) OST282100 (lexicon) OST117981 (lexicon) OST67014 (lexicon)
OST66991 (lexicon) OST36096 (lexicon)
Severity of mutation (?) Insertion after 7% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000612374 (Chr10:62708570..62708873 +)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
No primer for this exon TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000612374 (Chr10:62708570..62708873 +)
Downstram Exon
ENSMUSE00000271065 (Chr10:62726774..62726933 +)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
No primer for this exon No primer for this exon

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000612373 Chr10:62706659..62706911 No primer for this exon
upstream ENSMUSE00000612375 Chr10:62708166..62708196 No primer for this exon
upstream ENSMUSE00000612374 Chr10:62708570..62708873 No primer for this exon

*** Putative Vector Insertion (Chr 10: 62708874 - 62726773) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000271065 Chr10:62726774..62726933 No primer for this exon
downstream ENSMUSE00000100273 Chr10:62732376..62732452 No primer for this exon
downstream ENSMUSE00000453488 Chr10:62736199..62736420 No primer for this exon
downstream ENSMUSE00000453483 Chr10:62737745..62737836 No primer for this exon
downstream ENSMUSE00000453479 Chr10:62741083..62741213 No primer for this exon
downstream ENSMUSE00000453474 Chr10:62745929..62746089 No primer for this exon
downstream ENSMUSE00000453471 Chr10:62748400..62748476 No primer for this exon
downstream ENSMUSE00000453468 Chr10:62748765..62748889 No primer for this exon
downstream ENSMUSE00000453466 Chr10:62750267..62750326 No primer for this exon
downstream ENSMUSE00000453461 Chr10:62750646..62750757 No primer for this exon
downstream ENSMUSE00000453459 Chr10:62751800..62751989 No primer for this exon
downstream ENSMUSE00000358847 Chr10:62753252..62753424 No primer for this exon
downstream ENSMUSE00000270957 Chr10:62761868..62761987 No primer for this exon
downstream ENSMUSE00000575853 Chr10:62766593..62766616 No primer for this exon
downstream ENSMUSE00000270945 Chr10:62769096..62769194 No primer for this exon
downstream ENSMUSE00000270935 Chr10:62770490..62770657 No primer for this exon
downstream ENSMUSE00000270922 Chr10:62771055..62771198 No primer for this exon
downstream ENSMUSE00000270910 Chr10:62774215..62774381 No primer for this exon
downstream ENSMUSE00000270901 Chr10:62774596..62774662 No primer for this exon
downstream ENSMUSE00000270894 Chr10:62777235..62777317 No primer for this exon
downstream ENSMUSE00000270886 Chr10:62778408..62778591 No primer for this exon
downstream ENSMUSE00000270879 Chr10:62779448..62779550 No primer for this exon
downstream ENSMUSE00000401134 Chr10:62780028..62780622 No primer for this exon

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 GCAAAACTCAGATTGCTGTCC Chr10:62717876..62717897 59.87 47.62 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 AAAATTGCGTGACTGGGAAA Chr10:62717918..62717938 60.48 40 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000020064