Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI509
Trapped Gene
Wdr82 (ENSMUSG00000020257)
Vector Insertion
Chr 9: 106088844 - 106090926
Public Clones AL0574 (sanger) CH0174 (sanger) RRS226 (baygenomics)
Private Clones not available
Severity of mutation (?) Insertion after 97% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000102646 (Chr9:106088701..106088843 +)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
No primer for this exon TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000102646 (Chr9:106088701..106088843 +)
Downstram Exon
ENSMUSE00000349267 (Chr9:106090927..106093452 +)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
No primer for this exon No primer for this exon

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000401886 Chr9:106073260..106073710 No primer for this exon
upstream ENSMUSE00000354037 Chr9:106078944..106079041 No primer for this exon
upstream ENSMUSE00000263610 Chr9:106082897..106082963 No primer for this exon
upstream ENSMUSE00000263591 Chr9:106085947..106086046 No primer for this exon
upstream ENSMUSE00000263577 Chr9:106086511..106086627 No primer for this exon
upstream ENSMUSE00000263556 Chr9:106087014..106087169 No primer for this exon
upstream ENSMUSE00000263537 Chr9:106087580..106087649 No primer for this exon
upstream ENSMUSE00000102646 Chr9:106088701..106088843 No primer for this exon

*** Putative Vector Insertion (Chr 9: 106088844 - 106090926) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000349267 Chr9:106090927..106093452 No primer for this exon

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 ATTTGGTAATCGCCTTGCAG Chr9:106088889..106088909 60.1 45 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 TGCAATTCAACCCCAAGTTT Chr9:106088795..106088815 60.34 40 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000020257