Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI5275
Trapped Gene
Plk1 (ENSMUSG00000030867)
Vector Insertion
Chr 7: 129304219 - 129305020
Public Clones (sanger) YTA572 (baygenomics) YTA159 (baygenomics) YTA319 (baygenomics)
Private Clones not available
Severity of mutation (?) Insertion after 32% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000204485 (Chr7:129304050..129304218 +)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
CTTCCTGAACGAGGATCTGG Chr7:129304187..129304206 59.8 55 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000204485 (Chr7:129304050..129304218 +)
Downstram Exon
ENSMUSE00000204489 (Chr7:129305021..129305165 +)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
CTTCCTGAACGAGGATCTGG Chr7:129304187..129304206 59.8 55 ATTCCACTTTGGTTGCCAAG Chr7:129305053..129305072 59.97 45

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000395577 Chr7:129302999..129303464 ACGTCGTAGGCTTCCATGAC Chr7:129303391..129303410 60.14 55
upstream ENSMUSE00000204485 Chr7:129304050..129304218 CTTCCTGAACGAGGATCTGG Chr7:129304187..129304206 59.8 55

*** Putative Vector Insertion (Chr 7: 129304219 - 129305020) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000204489 Chr7:129305021..129305165 ATTCCACTTTGGTTGCCAAG Chr7:129305053..129305072 59.97 45
downstream ENSMUSE00000258376 Chr7:129305907..129306000 TAGGCACGAGGTCTCAAAGG Chr7:129305955..129305974 60.39 55
downstream ENSMUSE00000204494 Chr7:129307534..129307753 TGGTGAGGCAGGTAATAGGG Chr7:129307681..129307700 59.95 55
downstream ENSMUSE00000204486 Chr7:129311111..129311266 GACCACCGGTTCCTCTTTCT Chr7:129311166..129311185 60.49 55
downstream ENSMUSE00000204481 Chr7:129312080..129312157 CCGAATAGTCCACCCACTTG Chr7:129312145..129312164 60.37 55
downstream ENSMUSE00000204492 Chr7:129312343..129312497 ATAGGACTCCGTGCCATCAC Chr7:129312461..129312480 59.96 55
downstream ENSMUSE00000478737 Chr7:129312595..129312777 AACCACGTTCGTAGGTAGGG Chr7:129312716..129312735 58.98 55
downstream ENSMUSE00000411403 Chr7:129312901..129313387 CACCAGTCCGAAGGAGAGAG Chr7:129313129..129313148 59.98 60

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 GAACGAGGATCTGGAGGTGA Chr7:129304194..129304214 60.2 55 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 GAACGAGGATCTGGAGGTGA Chr7:129304194..129304214 60.2 55 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000030867