Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI5311
Trapped Gene
Sp2 (ENSMUSG00000018678)
Vector Insertion
Chr 11: 96829980 - 96838934
Public Clones (sanger) (sanger) (sanger) SYA303 (baygenomics) YTA156 (baygenomics)
XC297 (baygenomics) 5SE086F09 (ggtc) D001E05 (ggtc) 5SD071D07 (ggtc)
3SD001E05 (ggtc) P013A07 (ggtc) 3SD071D07 (ggtc) P016D04 (ggtc)
3SD072C08 (ggtc) PST9419-NR (escells) IST14142E6 (tigm) IST10029E2 (tigm)
IST14482G2 (tigm) IST14414D8 (tigm) IST14503D8 (tigm) IST13780G9 (tigm)
Private Clones not available
Severity of mutation (?) Insertion after 0% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000673971 (Chr11:96838935..96839002 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
No primer for this exon TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000673971 (Chr11:96838935..96839002 -)
Downstram Exon
ENSMUSE00000673959 (Chr11:96829902..96829979 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
No primer for this exon No primer for this exon

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000673954 Chr11:96844167..96844273 No primer for this exon
upstream ENSMUSE00000673953 Chr11:96842726..96842899 No primer for this exon
upstream ENSMUSE00000673962 Chr11:96838935..96839025 No primer for this exon
upstream ENSMUSE00000673971 Chr11:96838935..96839002 No primer for this exon

*** Putative Vector Insertion (Chr 11: 96829980 - 96838934) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000673959 Chr11:96829902..96829979 No primer for this exon
downstream ENSMUSE00000371569 Chr11:96824679..96824758 No primer for this exon
downstream ENSMUSE00000673958 Chr11:96824679..96824755 No primer for this exon
downstream ENSMUSE00000673970 Chr11:96824679..96824758 No primer for this exon
downstream ENSMUSE00000414411 Chr11:96822352..96823323 No primer for this exon
downstream ENSMUSE00000111024 Chr11:96818738..96819050 No primer for this exon
downstream ENSMUSE00000111023 Chr11:96817419..96817593 No primer for this exon
downstream ENSMUSE00000111019 Chr11:96817089..96817282 No primer for this exon
downstream ENSMUSE00000585965 Chr11:96815533..96815884 No primer for this exon
downstream ENSMUSE00000673957 Chr11:96814787..96815884 No primer for this exon
downstream ENSMUSE00000673960 Chr11:96814655..96815884 No primer for this exon
downstream ENSMUSE00000673964 Chr11:96814654..96815884 No primer for this exon

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 TAATCGCCTTGCAGCACATC Chr11:96829863..96829883 62.25 50 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 GGGAGGAAGATGTCGTAATGAG Chr11:96829935..96829957 59.96 50 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector
PCR 3 TAATCGCCTTGCAGCACATC Chr11:96829932..96829952 62.25 50 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 4 GGCTGTGAATTTGGAGTCGT Chr11:96832949..96832969 60.12 50 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000018678