Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI6061
Trapped Gene
Plk1 (ENSMUSG00000030867)
Vector Insertion
Chr 7: 129307754 - 129311110
Public Clones YHD119 (baygenomics) YHD114 (baygenomics) F009B06 (ggtc) PST9939-NR (escells)
PST18-2 (escells)
Private Clones not available
Severity of mutation (?) Insertion after 57% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000204494 (Chr7:129307534..129307753 +)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
CCCTATTACCTGCCTCACCA Chr7:129307659..129307678 59.95 55 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000204494 (Chr7:129307534..129307753 +)
Downstram Exon
ENSMUSE00000204486 (Chr7:129311111..129311266 +)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
CCCTATTACCTGCCTCACCA Chr7:129307659..129307678 59.95 55 GACCACCGGTTCCTCTTTCT Chr7:129311166..129311185 60.49 55

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000395577 Chr7:129302999..129303464 ACGTCGTAGGCTTCCATGAC Chr7:129303391..129303410 60.14 55
upstream ENSMUSE00000204485 Chr7:129304050..129304218 CTTCCTGAACGAGGATCTGG Chr7:129304187..129304206 59.8 55
upstream ENSMUSE00000204489 Chr7:129305021..129305165 CTTGGCAACCAAAGTGGAAT Chr7:129305031..129305050 59.97 45
upstream ENSMUSE00000258376 Chr7:129305907..129306000 CCTTTGAGACCTCGTGCCTA Chr7:129305933..129305952 60.39 55
upstream ENSMUSE00000204494 Chr7:129307534..129307753 CCCTATTACCTGCCTCACCA Chr7:129307659..129307678 59.95 55

*** Putative Vector Insertion (Chr 7: 129307754 - 129311110) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000204486 Chr7:129311111..129311266 GACCACCGGTTCCTCTTTCT Chr7:129311166..129311185 60.49 55
downstream ENSMUSE00000204481 Chr7:129312080..129312157 CCGAATAGTCCACCCACTTG Chr7:129312145..129312164 60.37 55
downstream ENSMUSE00000204492 Chr7:129312343..129312497 ATAGGACTCCGTGCCATCAC Chr7:129312461..129312480 59.96 55
downstream ENSMUSE00000478737 Chr7:129312595..129312777 AACCACGTTCGTAGGTAGGG Chr7:129312716..129312735 58.98 55
downstream ENSMUSE00000411403 Chr7:129312901..129313387 CACCAGTCCGAAGGAGAGAG Chr7:129313129..129313148 59.98 60

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 TTGTAAGCGCACAAAAGCAG Chr7:129310759..129310779 60.19 45 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 TTGTAAGCGCACAAAAGCAG Chr7:129310759..129310779 60.19 45 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000030867