Tools for the biologist enabling optimized use of gene trap clones

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UniTrap UNI6209
Trapped Gene
Eif2s2 (ENSMUSG00000074656)
Vector Insertion
Chr 2: 154704301 - 154710046
Public Clones CSG276 (baygenomics) PST9679-NR (escells) PST8447-NL (escells)
Private Clones not available
Severity of mutation (?) Insertion after 43% of polypeptide chain

Suggested RT-PCR (?)
Control PCR for the trapped allele
Upstream Exon
ENSMUSE00000639770 (Chr2:154710047..154710182 -)
Vector Sequence
Forward Primer Location Tm %GC LacZrt Reverse Primer Location
TGACATTATGCTTGGCAACAA Chr2:154710109..154710129 60.13 38.1 TGGCGAAAGGGGGATGTG Gene trap vector
 
 
Control PCR for the wild-type allele
Upstream Exon
ENSMUSE00000639770 (Chr2:154710047..154710182 -)
Downstram Exon
ENSMUSE00000639769 (Chr2:154704206..154704300 -)
Forward Primer Location Tm %GC Reverse Primer Location Tm %GC
TGACATTATGCTTGGCAACAA Chr2:154710109..154710129 60.13 38.1 CCAAGCAGTTTGGCTACTGA Chr2:154704217..154704236 59.07 50

Other possible Exon-Primers for RT-PCR (?)
  Exon ID Exon location Forward Primer Primer location Tm %GC
upstream ENSMUSE00000681253 Chr2:154718426..154718553 TGCGGTGCTGTGAGAAGTAT Chr2:154718523..154718542 59.47 50
upstream ENSMUSE00000639772 Chr2:154713919..154714096 AAAAAGACGTGGACGCTGAT Chr2:154713941..154713960 59.74 45
upstream ENSMUSE00000639771 Chr2:154713440..154713543 TTTGACATTGATGAAGCTGAAGA Chr2:154713450..154713472 59.88 34.78
upstream ENSMUSE00000639770 Chr2:154710047..154710182 TGACATTATGCTTGGCAACAA Chr2:154710109..154710129 60.13 38.1

*** Putative Vector Insertion (Chr 2: 154704301 - 154710046) ***

  Exon ID Exon location Reverse Primer Primer location Tm %GC
downstream ENSMUSE00000639769 Chr2:154704206..154704300 CCAAGCAGTTTGGCTACTGA Chr2:154704217..154704236 59.07 50
downstream ENSMUSE00000639767 Chr2:154703407..154703555 GTTGAACACTCGGTTCAGCA Chr2:154703513..154703532 59.88 50
downstream ENSMUSE00000639766 Chr2:154702352..154702408 AGGAGATGTTTGGGTTGACG Chr2:154702360..154702379 59.97 50
downstream ENSMUSE00000639765 Chr2:154699285..154699370 No primer for this exon
downstream ENSMUSE00000639763 Chr2:154698173..154698636 TGTAGGATTGTGTCCGGTGA Chr2:154698566..154698585 59.96 50

Suggested Genomic-PCR (?)
  Forward Forward location Tm %GC Reverse name Reverse Reverse Location
PCR 1 TGGGGATTCAGCACTTTGAT Chr2:154710018..154710038 60.46 45 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 2 AATGTTGGGGATTCAGCACT Chr2:154710023..154710043 59.41 45 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector
PCR 3 AGGAGGTAATCGCCTTGCAG Chr2:154704189..154704209 61.65 55 L232 GATGTGCTGCAAGGCGATTA Gene trap vector
PCR 4 GGATGCGTGACTGGGAAAAC Chr2:154704117..154704137 62.78 55 LacZ CCAGGGTTTTCCCAGTCACG Gene trap vector

Come back to gene ENSMUSG00000074656