|
Exon ID |
Exon location |
Forward Primer |
Primer location |
Tm |
%GC |
upstream |
ENSMUSE00000377299 |
Chr4:138936602..138936777 |
CTACTCCGCCTTCGAGATGA |
Chr4:138936721..138936740 |
60.49 |
55 |
upstream |
ENSMUSE00000347588 |
Chr4:138944283..138944380 |
CACCACGAGAAGCAGTACGA |
Chr4:138944299..138944318 |
60.05 |
55 |
upstream |
ENSMUSE00000403106 |
Chr4:138946755..138946858 |
GAGTTTTCCCTCCTGCGTCT |
Chr4:138946805..138946824 |
60.77 |
55 |
upstream |
ENSMUSE00000343228 |
Chr4:138947700..138947829 |
GCCAAGCTTCCACAGACAGT |
Chr4:138947793..138947812 |
60.45 |
55 |
upstream |
ENSMUSE00000399791 |
Chr4:138947935..138948074 |
CTCCTCCCATCAGTCCACAG |
Chr4:138948049..138948068 |
60.67 |
60 |
upstream |
ENSMUSE00000352042 |
Chr4:138948699..138948801 |
GCTGCCAAGACCAAGAGTGT |
Chr4:138948744..138948763 |
60.45 |
55 |
upstream |
ENSMUSE00000376224 |
Chr4:138948932..138949073 |
GTATGCCTGAACCTGCCCTA |
Chr4:138948955..138948974 |
60.1 |
55 |
upstream |
ENSMUSE00000338486 |
Chr4:138949210..138949334 |
CCCTCAATCCTTCTCGTCTG |
Chr4:138949275..138949294 |
59.8 |
55 |
upstream |
ENSMUSE00000374176 |
Chr4:138952472..138952596 |
CAGCCACGATTGTTCAGAAA |
Chr4:138952574..138952593 |
59.84 |
45 |
upstream |
ENSMUSE00000409305 |
Chr4:138953068..138953127 |
No primer for this exon |
upstream |
ENSMUSE00000596698 |
Chr4:138953209..138953399 |
CTGGTGCCTGCTTAATAGCC |
Chr4:138953238..138953257 |
59.87 |
55 |
upstream |
ENSMUSE00000596697 |
Chr4:138955477..138955576 |
CTCGGTGATACTGGCAAACC |
Chr4:138955498..138955517 |
60.52 |
55 |
upstream |
ENSMUSE00000596696 |
Chr4:138955712..138955849 |
TCAACGGCTGATTGACTCTG |
Chr4:138955780..138955799 |
59.98 |
50 |
upstream |
ENSMUSE00000596695 |
Chr4:138956240..138956357 |
TAGCACAGAGGAGGACAGCA |
Chr4:138956332..138956351 |
59.73 |
55 |
upstream |
ENSMUSE00000596694 |
Chr4:138957196..138957383 |
GCTCTCCTCGGGTTAAAAGC |
Chr4:138957301..138957320 |
60.34 |
55 |
upstream |
ENSMUSE00000596693 |
Chr4:138958424..138958583 |
ATCTGAGCGCCTCTCTCTCA |
Chr4:138958503..138958522 |
60.4 |
55 |
upstream |
ENSMUSE00000596692 |
Chr4:138958662..138958747 |
ACCACTCGCTGGTGACTTCT |
Chr4:138958704..138958723 |
59.91 |
55 |
upstream |
ENSMUSE00000596691 |
Chr4:138962394..138962563 |
CCCTGAATGCCTGAAAGTGT |
Chr4:138962537..138962556 |
60.11 |
50 |
upstream |
ENSMUSE00000596690 |
Chr4:138963628..138963910 |
GAGCCATCTTGACCATGCTT |
Chr4:138963753..138963772 |
60.23 |
50 |
upstream |
ENSMUSE00000596689 |
Chr4:138964455..138964590 |
AGTGGATCCCAAGACAGCAG |
Chr4:138964494..138964513 |
60.26 |
55 |
upstream |
ENSMUSE00000596688 |
Chr4:138964754..138964833 |
GGTTCTACTGCGTCCTGTCC |
Chr4:138964772..138964791 |
59.73 |
60 |
upstream |
ENSMUSE00000596687 |
Chr4:138965588..138965716 |
TCCAAGCCTGTCAAGTACGA |
Chr4:138965606..138965625 |
59.44 |
50 |
upstream |
ENSMUSE00000596686 |
Chr4:138966003..138966185 |
GCCTCCGGATCAGTTCCTAT |
Chr4:138966151..138966170 |
60.43 |
55 |
*** Putative Vector Insertion (Chr 4: 138966186 - 138966321) ***
|
|
Exon ID |
Exon location |
Reverse Primer |
Primer location |
Tm |
%GC |
downstream |
ENSMUSE00000596685 |
Chr4:138966322..138966444 |
TGTCGGGCAAAGTACTCCTC |
Chr4:138966446..138966465 |
60.26 |
55 |
downstream |
ENSMUSE00000596684 |
Chr4:138966537..138966766 |
GGTGAACGAGGCATAGGTGT |
Chr4:138966767..138966786 |
60 |
55 |
downstream |
ENSMUSE00000596683 |
Chr4:138968541..138968662 |
CACCTACTGGAGCCGATAGC |
Chr4:138968648..138968667 |
59.86 |
60 |
downstream |
ENSMUSE00000596682 |
Chr4:138969327..138969424 |
CAGGATCCAATGTTGGGAAA |
Chr4:138969426..138969445 |
60.69 |
45 |
downstream |
ENSMUSE00000596681 |
Chr4:138970258..138970415 |
CTGCACGGCACTGATGTAAC |
Chr4:138970317..138970336 |
60.33 |
55 |
downstream |
ENSMUSE00000524437 |
Chr4:138970385..138970415 |
AATCAGATCCCCAGTCAACCT |
Chr4:138970415..138970435 |
59.81 |
47.62 |
downstream |
ENSMUSE00000281754 |
Chr4:138970915..138971124 |
ACTCATCAGACTCCGCAGGT |
Chr4:138971054..138971073 |
59.87 |
55 |
downstream |
ENSMUSE00000281745 |
Chr4:138972468..138972569 |
ACTCCTCCAGGATGGACTCA |
Chr4:138972499..138972518 |
59.64 |
55 |
downstream |
ENSMUSE00000281739 |
Chr4:138972771..138972871 |
AGAGGTCCTCATTGGCTGTG |
Chr4:138972820..138972839 |
60.26 |
55 |
downstream |
ENSMUSE00000281733 |
Chr4:138973106..138973304 |
TCCAGCTGGTCAGAATCCTT |
Chr4:138973244..138973263 |
59.8 |
50 |
downstream |
ENSMUSE00000281724 |
Chr4:138974317..138974505 |
TAGAGTGGCCATCACAACCA |
Chr4:138974440..138974459 |
60.11 |
50 |
downstream |
ENSMUSE00000281715 |
Chr4:138975083..138975146 |
CATTGGCATTCAGCTTCTCA |
Chr4:138975135..138975154 |
59.95 |
45 |
downstream |
ENSMUSE00000281709 |
Chr4:138976294..138976485 |
TTGGGCCTTGACCATTACTC |
Chr4:138976387..138976406 |
59.93 |
50 |
downstream |
ENSMUSE00000281701 |
Chr4:138976996..138977066 |
No primer for this exon |
downstream |
ENSMUSE00000281693 |
Chr4:138977146..138977293 |
ATGGCATACCTTTGCACACA |
Chr4:138977218..138977237 |
59.99 |
45 |
downstream |
ENSMUSE00000281686 |
Chr4:138977612..138977839 |
GGAAACCCTAGGTTCGCTCT |
Chr4:138977695..138977714 |
59.71 |
55 |
downstream |
ENSMUSE00000281679 |
Chr4:138978308..138978478 |
TGTCCACTGTGTGCAGTTCA |
Chr4:138978452..138978471 |
59.9 |
50 |
downstream |
ENSMUSE00000343345 |
Chr4:138979742..138979924 |
TGTGAGCCTAAGGTGGGAAC |
Chr4:138979764..138979783 |
60.11 |
55 |
downstream |
ENSMUSE00000281660 |
Chr4:138980675..138980833 |
CCAGGTAGTCCTCCTTGCAG |
Chr4:138980819..138980838 |
59.86 |
60 |
downstream |
ENSMUSE00000281654 |
Chr4:138981128..138981280 |
GCCAACTGGGGATGTAACAC |
Chr4:138981201..138981220 |
60.24 |
55 |
downstream |
ENSMUSE00000281646 |
Chr4:138981614..138981841 |
GTTCTTGCCTTCCTCGTTGA |
Chr4:138981721..138981740 |
60.38 |
50 |
downstream |
ENSMUSE00000281640 |
Chr4:138982693..138982850 |
ACCTGCCCTGACTGTAGCTG |
Chr4:138982786..138982805 |
60.47 |
60 |
downstream |
ENSMUSE00000281634 |
Chr4:138983950..138984121 |
GTTCATCACCTCGGACCACT |
Chr4:138984010..138984029 |
59.97 |
55 |
downstream |
ENSMUSE00000281627 |
Chr4:138984405..138984606 |
CATGGTTGTACGTTGCTGCT |
Chr4:138984467..138984486 |
59.79 |
50 |
downstream |
ENSMUSE00000281606 |
Chr4:138985407..138985570 |
AAGAGGTCATTACCGCCAAA |
Chr4:138985503..138985522 |
59.57 |
45 |
downstream |
ENSMUSE00000281598 |
Chr4:138986039..138986255 |
GCCGAAGATCTCGATGTAGG |
Chr4:138986161..138986180 |
59.8 |
55 |
downstream |
ENSMUSE00000281592 |
Chr4:138987460..138987676 |
TCAGGTTAGGAGGGCAGATG |
Chr4:138987609..138987628 |
60.21 |
55 |
downstream |
ENSMUSE00000416497 |
Chr4:138988397..138988429 |
CCAGCTTGGTTAGGGACTCA |
Chr4:138988428..138988447 |
60.25 |
55 |
downstream |
ENSMUSE00000596680 |
Chr4:138989535..138989598 |
CAGGGCTTCCAAAGAACTCA |
Chr4:138989565..138989584 |
60.37 |
50 |
downstream |
ENSMUSE00000596679 |
Chr4:138989909..138990043 |
AGGAGGCTCTTTGATTGCTG |
Chr4:138990003..138990022 |
59.57 |
50 |
downstream |
ENSMUSE00000281580 |
Chr4:138990925..138991099 |
AGGTTGTTAGGGCGTGTGAC |
Chr4:138991061..138991080 |
60.03 |
55 |
downstream |
ENSMUSE00000667584 |
Chr4:138991864..138991947 |
CCCCAATCAATATGCCAACT |
Chr4:138991926..138991945 |
59.65 |
45 |
downstream |
ENSMUSE00000416475 |
Chr4:138992037..138992174 |
CTACAGCCGTCTCCTTCCTG |
Chr4:138992091..138992110 |
60.01 |
60 |
downstream |
ENSMUSE00000524435 |
Chr4:138992988..138993109 |
ACCAACGCATTAACCGTAGC |
Chr4:138993027..138993046 |
60.03 |
50 |
downstream |
ENSMUSE00000714688 |
Chr4:138993965..138994076 |
GTTCCTGGGCCTTAGGACTC |
Chr4:138994027..138994046 |
60.07 |
60 |
downstream |
ENSMUSE00000715787 |
Chr4:138993965..138994076 |
GTTCCTGGGCCTTAGGACTC |
Chr4:138994027..138994046 |
60.07 |
60 |
downstream |
ENSMUSE00000524433 |
Chr4:138996326..138996456 |
TTCTCATCTGCGTCATCGTC |
Chr4:138996368..138996387 |
59.95 |
50 |
downstream |
ENSMUSE00000667582 |
Chr4:138996326..138996456 |
TTCTCATCTGCGTCATCGTC |
Chr4:138996368..138996387 |
59.95 |
50 |
downstream |
ENSMUSE00000524432 |
Chr4:138996560..138996737 |
GTTTCCAGGACCATCGACTC |
Chr4:138996585..138996604 |
59.51 |
55 |
downstream |
ENSMUSE00000667581 |
Chr4:138996560..138996737 |
GTTTCCAGGACCATCGACTC |
Chr4:138996585..138996604 |
59.51 |
55 |
downstream |
ENSMUSE00000365965 |
Chr4:138997107..138997211 |
CTGCGTCCAGAGAGGAAGAG |
Chr4:138997187..138997206 |
60.28 |
60 |
downstream |
ENSMUSE00000667580 |
Chr4:138997107..138997211 |
CTGCGTCCAGAGAGGAAGAG |
Chr4:138997187..138997206 |
60.28 |
60 |
downstream |
ENSMUSE00000524431 |
Chr4:138998601..138998738 |
No primer for this exon |
downstream |
ENSMUSE00000667579 |
Chr4:138998601..138998738 |
No primer for this exon |
downstream |
ENSMUSE00000524430 |
Chr4:138999314..138999488 |
CGTCACCATATGCACTGCTC |
Chr4:138999346..138999365 |
60.3 |
55 |
downstream |
ENSMUSE00000630777 |
Chr4:138999314..138999488 |
CGTCACCATATGCACTGCTC |
Chr4:138999346..138999365 |
60.3 |
55 |
downstream |
ENSMUSE00000524429 |
Chr4:139000510..139000606 |
CAGCATCAGACGAACCATGT |
Chr4:139000537..139000556 |
59.71 |
50 |
downstream |
ENSMUSE00000630798 |
Chr4:139000510..139000606 |
CAGCATCAGACGAACCATGT |
Chr4:139000537..139000556 |
59.71 |
50 |
downstream |
ENSMUSE00000524428 |
Chr4:139001159..139001266 |
CTTTTTGTCCATGCCCAACT |
Chr4:139001269..139001288 |
59.97 |
45 |
downstream |
ENSMUSE00000667578 |
Chr4:139001159..139001266 |
CTTTTTGTCCATGCCCAACT |
Chr4:139001269..139001288 |
59.97 |
45 |
downstream |
ENSMUSE00000524427 |
Chr4:139001774..139001890 |
TCTCATCACGACCAAATGGA |
Chr4:139001836..139001855 |
60.05 |
45 |
downstream |
ENSMUSE00000667577 |
Chr4:139001774..139001890 |
TCTCATCACGACCAAATGGA |
Chr4:139001836..139001855 |
60.05 |
45 |
downstream |
ENSMUSE00000524426 |
Chr4:139002774..139002983 |
TACTGGCGGAGAAAGAATGG |
Chr4:139002979..139002998 |
60.21 |
50 |
downstream |
ENSMUSE00000667576 |
Chr4:139002774..139002983 |
TACTGGCGGAGAAAGAATGG |
Chr4:139002979..139002998 |
60.21 |
50 |
downstream |
ENSMUSE00000524391 |
Chr4:139004737..139004886 |
TGGTGTCTGCGATCTTCTTG |
Chr4:139004833..139004852 |
59.98 |
50 |
downstream |
ENSMUSE00000524425 |
Chr4:139004737..139004886 |
TGGTGTCTGCGATCTTCTTG |
Chr4:139004833..139004852 |
59.98 |
50 |
downstream |
ENSMUSE00000281547 |
Chr4:139006230..139006457 |
TCGGAGCTGTCGGTATTTCT |
Chr4:139006328..139006347 |
59.84 |
50 |
downstream |
ENSMUSE00000667575 |
Chr4:139006230..139006457 |
TCGGAGCTGTCGGTATTTCT |
Chr4:139006328..139006347 |
59.84 |
50 |
downstream |
ENSMUSE00000281542 |
Chr4:139007161..139007239 |
No primer for this exon |
downstream |
ENSMUSE00000667574 |
Chr4:139007161..139007239 |
No primer for this exon |
downstream |
ENSMUSE00000281540 |
Chr4:139007643..139007887 |
TTGGACTGAGTTGTGGCTTG |
Chr4:139007841..139007860 |
59.87 |
50 |
downstream |
ENSMUSE00000487099 |
Chr4:139007643..139007888 |
TTGGACTGAGTTGTGGCTTG |
Chr4:139007841..139007860 |
59.87 |
50 |
downstream |
ENSMUSE00000667573 |
Chr4:139007643..139007848 |
TTGGACTGAGTTGTGGCTTG |
Chr4:139007841..139007860 |
59.87 |
50 |
downstream |
ENSMUSE00000281536 |
Chr4:139008486..139008654 |
AAACAGCGCAGAAACTGGAT |
Chr4:139008591..139008610 |
59.88 |
45 |
downstream |
ENSMUSE00000281533 |
Chr4:139009050..139009194 |
GCTGAGCCTTGTTGGAGTTT |
Chr4:139009072..139009091 |
59.48 |
50 |
downstream |
ENSMUSE00000281526 |
Chr4:139009887..139009972 |
GAGTTGGGGTGATTGGTGAG |
Chr4:139009963..139009982 |
60.36 |
55 |
downstream |
ENSMUSE00000281519 |
Chr4:139011082..139011169 |
GCCGTCAAACTCCACTAAGC |
Chr4:139011115..139011134 |
59.88 |
55 |
downstream |
ENSMUSE00000281514 |
Chr4:139011363..139011556 |
GTCACCTTGCTGATGGTGTG |
Chr4:139011460..139011479 |
60.16 |
55 |
downstream |
ENSMUSE00000281508 |
Chr4:139013447..139013686 |
CTTCTGTCTGTCCGGGAGTC |
Chr4:139013505..139013524 |
59.83 |
60 |
downstream |
ENSMUSE00000281503 |
Chr4:139014010..139014148 |
CAAGGCTTGGCATAAAGCAT |
Chr4:139014108..139014127 |
60.23 |
45 |
downstream |
ENSMUSE00000281191 |
Chr4:139014714..139014839 |
GCAGAGCAGGTTCTCCAACT |
Chr4:139014809..139014828 |
59.6 |
55 |
downstream |
ENSMUSE00000281184 |
Chr4:139014941..139015069 |
TGCAGGATGTAGCGATTCAC |
Chr4:139015008..139015027 |
59.83 |
50 |
downstream |
ENSMUSE00000375047 |
Chr4:139015914..139016257 |
CAAAGAGCTCTCGGATGAGG |
Chr4:139016190..139016209 |
60.09 |
55 |
downstream |
ENSMUSE00000281168 |
Chr4:139017743..139017833 |
TGATCAGGTCGTTCATTTGC |
Chr4:139017786..139017805 |
59.65 |
45 |
downstream |
ENSMUSE00000281473 |
Chr4:139018093..139018177 |
GATGGAATCTGTCAGCAGCA |
Chr4:139018140..139018159 |
59.95 |
50 |
downstream |
ENSMUSE00000281462 |
Chr4:139018317..139018444 |
ACAACCACTGGCGTTTTGAT |
Chr4:139018368..139018387 |
60.42 |
45 |
downstream |
ENSMUSE00000596699 |
Chr4:139019195..139019324 |
ATAGGCAGGCACTTCTTCCA |
Chr4:139019322..139019341 |
59.84 |
50 |
downstream |
ENSMUSE00000281442 |
Chr4:139019413..139019570 |
CCACACGTACTTCTCGGTCA |
Chr4:139019489..139019508 |
59.74 |
55 |
downstream |
ENSMUSE00000281429 |
Chr4:139019900..139020009 |
AGCTTCCACGATGGTACAGG |
Chr4:139019962..139019981 |
60.13 |
55 |
downstream |
ENSMUSE00000281419 |
Chr4:139020457..139020598 |
AGGCGATGAGCTTCTGGTAG |
Chr4:139020533..139020552 |
59.6 |
55 |
downstream |
ENSMUSE00000281410 |
Chr4:139020874..139020955 |
No primer for this exon |
downstream |
ENSMUSE00000281401 |
Chr4:139021209..139021382 |
AGCACAGGTACCCATTCAGC |
Chr4:139021301..139021320 |
60.14 |
55 |
downstream |
ENSMUSE00000281388 |
Chr4:139023128..139023249 |
CAGATTGTAGCGCTTTGCTG |
Chr4:139023195..139023214 |
59.78 |
50 |
downstream |
ENSMUSE00000281382 |
Chr4:139023921..139024118 |
GCATCCTGCCCTGTAGAAAG |
Chr4:139024002..139024021 |
59.84 |
55 |
downstream |
ENSMUSE00000281376 |
Chr4:139024705..139024785 |
CGGGAAGGTCCAGACTGATA |
Chr4:139024747..139024766 |
60.06 |
55 |
downstream |
ENSMUSE00000415964 |
Chr4:139025591..139025678 |
CCCGCATTCGATAAACAATC |
Chr4:139025627..139025646 |
60.29 |
45 |
downstream |
ENSMUSE00000281364 |
Chr4:139026114..139026241 |
ACCGGCCATTCTGTACACTT |
Chr4:139026157..139026176 |
59.48 |
50 |
downstream |
ENSMUSE00000281359 |
Chr4:139027220..139027327 |
AGAGTCCCCAGCATGACATT |
Chr4:139027323..139027342 |
59.53 |
50 |
downstream |
ENSMUSE00000281354 |
Chr4:139027647..139027766 |
GCTCTGCGTTGGATTCATCT |
Chr4:139027752..139027771 |
60.37 |
50 |
downstream |
ENSMUSE00000281347 |
Chr4:139028387..139028577 |
TCTCCGAAGGACAGGTATGG |
Chr4:139028523..139028542 |
60.06 |
55 |
downstream |
ENSMUSE00000281340 |
Chr4:139028986..139029159 |
CTTGATACCGGCAGCAATTT |
Chr4:139029061..139029080 |
60.1 |
45 |
downstream |
ENSMUSE00000281332 |
Chr4:139029452..139029551 |
TTTCCAGATGTCAGCATCCA |
Chr4:139029476..139029495 |
60.2 |
45 |
downstream |
ENSMUSE00000281324 |
Chr4:139032046..139032264 |
AGCTTATGCAGGCTCGTGAT |
Chr4:139032089..139032108 |
60.01 |
50 |
downstream |
ENSMUSE00000281314 |
Chr4:139033043..139033156 |
CAGGAGTGCAGTCTTGGTCA |
Chr4:139033087..139033106 |
60.02 |
55 |
downstream |
ENSMUSE00000181734 |
Chr4:139034833..139034975 |
ACCCGCTTGGTGAAAGTGTA |
Chr4:139034876..139034895 |
60.55 |
50 |
downstream |
ENSMUSE00000181727 |
Chr4:139035365..139035490 |
CAAGTGGCGAAAGCTGATTC |
Chr4:139035484..139035503 |
60.91 |
50 |
downstream |
ENSMUSE00000181728 |
Chr4:139036557..139036751 |
TCCTGGAGGTACGTGTTGTG |
Chr4:139036580..139036599 |
59.59 |
55 |
downstream |
ENSMUSE00000181733 |
Chr4:139038373..139038597 |
TCCACTTCTCTTTGGGCTGT |
Chr4:139038443..139038462 |
59.84 |
50 |
downstream |
ENSMUSE00000181732 |
Chr4:139041200..139041290 |
TAGTCCTTCACCGCCTTGTC |
Chr4:139041229..139041248 |
60.26 |
55 |
downstream |
ENSMUSE00000181730 |
Chr4:139041900..139042062 |
AGCCGCCCTCAGTGTTACTA |
Chr4:139041933..139041952 |
59.9 |
55 |
downstream |
ENSMUSE00000596678 |
Chr4:139045082..139045444 |
CCACTCCGAGAAAACTGAGG |
Chr4:139045274..139045293 |
59.84 |
55 |